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zeroclickinfo-goodies
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ReverseComplement: Small tidy up

master
Rob Emery 2016-05-18 22:21:20 +01:00
parent 3c152febc2
commit 893ede356b
1 changed files with 4 additions and 4 deletions
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8
t/ReverseComplement.t
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@ -21,20 +21,20 @@ sub build_test {
templates => {
group => 'text'
}
})
});
}
ddg_goodie_test(
[qw( DDG::Goodie::ReverseComplement)],
#Basic DNA reverse complements, various trigger combinations
'AAAACCCGGT reverse complement' => build_test(@aaaacccggt),
'reverse complement of TTTGATCATGGCTCAGGACGAACGCTGGCGGCGT' => build_test("ACGCCGCCAGCGTTCGTCCTGAGCCATGATCAAA", 'TTTGATCATGGCTCAGGACGAACGCTGGCGGCGT'),
'AAAACCCGGT reverse complement' => build_test(@aaaacccggt),
'AAAACCCGGT revcomp' => build_test(@aaaacccggt),
'revcomp AAAACCCGGT' => build_test(@aaaacccggt),
'revcomp of AAAACCCGGT' => build_test(@aaaacccggt),
'DNA revcomp of sequence AAAACCCGGT' => build_test(@aaaacccggt),
'reverse complement of RNA sequence AAAACCCGGU' => build_test("ACCGGGTTTT", 'AAAACCCGGU'),
'reverse complement of TTTGATCATGGCTCAGGACGAACGCTGGCGGCGT' => build_test("ACGCCGCCAGCGTTCGTCCTGAGCCATGATCAAA", 'TTTGATCATGGCTCAGGACGAACGCTGGCGGCGT'),
#RNA reverse complement with acceptable spacing characters
'reverse complement uca gac gga' => build_test("TCCGTCTGA", 'UCAGACGGA'),
@ -47,7 +47,7 @@ ddg_goodie_test(
'TCAAAWWDGGATTAMATACCCTGGTAGTCCACRCCATAAACGATGTATGCTTGGTGRGVGTGAGTAATCACTCAGTMCGAAGGCAACCTGATAAGCATACCKCCTVGAGTACGATCSCAAGGTTGAAACTCA'
),
'reverse complement CUAKCCAAGCCGACGASUCGGUAGCUGGUCUGAGAGKGACGAACAGCCACACUGGAACUGAGACAYCGGUCCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAKUGGACRGCAAGUCUGAACCAYGCGACGRCGCGUGCGGGAUGAAGGGGCUUAGCCUCGUAAACDCGCURGUCAAGAGGGACGAGAGGHGCGAUUUUGUMCGUCCGGGWWACGV'
=> build_test(
=> build_test(
"BCGTWWCCCGGACGKACAAAATCGCDCCTCTCGTCCCTCTTGACYAGCGHGTTTACGAGGCTAAGCCCCTTCATCCCGCACGCGYCGTCGCRTGGTTCAGACTTGCYGTCCAMTTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGRTGTCTCAGTTCCAGTGTGGCTGTTCGTCMCTCTCAGACCAGCTACCGASTCGTCGGCTTGGMTAG",
'CUAKCCAAGCCGACGASUCGGUAGCUGGUCUGAGAGKGACGAACAGCCACACUGGAACUGAGACAYCGGUCCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAKUGGACRGCAAGUCUGAACCAYGCGACGRCGCGUGCGGGAUGAAGGGGCUUAGCCUCGUAAACDCGCURGUCAAGAGGGACGAGAGGHGCGAUUUUGUMCGUCCGGGWWACGV',
),